Silvio C. E. Tosatto : rechercher sur Z-Library

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1

QMEAN: A comprehensive scoring function for model quality assessment

Pascal Benkert, Silvio C. E. Tosatto, Dietmar Schomburg

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 499 KB

english, 2008

2

The Catalytic Site of Glutathione Peroxidases

Tosatto, Silvio C. E., Bosello, Valentina, Fogolari, Federico, Mauri, Pierluigi, Roveri, Antonella, Toppo, Stefano, Flohé, Leopold, Ursini, Fulvio, Maiorino, Matilde

Journal:

Antioxidants & Redox Signaling

Année:

2008

Langue:

english

Fichier:

PDF, 468 KB

english, 2008

3

Unfoldome variation upon plant-pathogen interactions: strawberry infection byColletotrichum acutatum

Baraldi, Elena, Coller, Emanuela, Zoli, Lisa, Cestaro, Alessandro, Tosatto, Silvio C. E., Zambelli, Barbara

Journal:

Plant Molecular Biology

Année:

2015

Langue:

english

Fichier:

PDF, 2.82 MB

english, 2015

4

Network analysis of dynamically important residues in protein structures mediating ligand-binding conformational changes

Saldaño, Tadeo E., Tosatto, Silvio C. E., Parisi, Gustavo, Fernandez-Alberti, Sebastian

Journal:

European Biophysics Journal

Année:

2019

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2019

5

LGI1 mutations in autosomal dominant and sporadic lateral temporal epilepsy

Carlo Nobile, Roberto Michelucci, Simonetta Andreazza, Elena Pasini, Silvio C.E. Tosatto, Pasquale Striano

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 275 KB

english, 2009

6

Comparative analysis of [FeFe] hydrogenase from Thermotogales indicates the molecular basis of resistance to oxygen inactivation

Silvio C.E. Tosatto, Stefano Toppo, Donatella Carbonera, Giorgio M. Giacometti, Paola Costantini

Journal:

International Journal of Hydrogen Energy

Année:

2008

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2008

7

QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information

Pascal Benkert, Torsten Schwede, Silvio CE Tosatto

Journal:

BMC Structural Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2009

8

Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust

Pascal Benkert, Silvio C. E. Tosatto, Torsten Schwede

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 236 KB

english, 2009

9

Identification and In Silico Analysis of Novel von Hippel-Lindau (VHL) Gene Variants from a Large Population

Emanuela Leonardi, Maddalena Martella, Silvio C.E. Tosatto, Alessandra Murgia

Journal:

Annals of Human Genetics

Année:

2011

Langue:

english

Fichier:

PDF, 666 KB

english, 2011

10

Application of MM/PBSA colony free energy to loop decoy discrimination: Toward correlation between energy and root mean square deviation

Federico Fogolari, Silvio C.E. Tosatto

Journal:

Protein Science

Année:

2005

Langue:

english

Fichier:

PDF, 306 KB

english, 2005

11

Inhibitory interaction of the 14-3-3 proteins with ubiquitous (PMCA1) and tissue-specific (PMCA3) isoforms of the plasma membrane Ca2+ pump

Cristina I. Linde, Francesca Di Leva, Teuta Domi, Silvio C.E. Tosatto, Marisa Brini, Ernesto Carafoli

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 931 KB

english, 2008

12

Electric dipole reorientation in the interaction of botulinum neurotoxins with neuronal membranes

Federico Fogolari, Silvio C.E. Tosatto, Lucia Muraro, Cesare Montecucco

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 437 KB

english, 2009

13

FRASS: the web-server for RNA structural comparison

Svetlana Kirillova, Silvio CE Tosatto, Oliviero Carugo

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1001 KB

english, 2010

14

A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators

Federico Fogolari, Silvio CE Tosatto, Giorgio Colombo

Journal:

BMC Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2005

15

Improving the quality of protein structure models by selecting from alignment alternatives

Ingolf Sommer, Stefano Toppo, Oliver Sander, Thomas Lengauer, Silvio CE Tosatto

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 534 KB

english, 2006

16

TAP score: torsion angle propensity normalization applied to local protein structure evaluation

Silvio CE Tosatto, Roberto Battistutta

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2007

17

Structural insights into the function of human caveolin 1

Enzo Spisni, Vittorio Tomasi, Alessandro Cestaro, Silvio C.E. Tosatto

Journal:

Biochemical and Biophysical Research Communications

Année:

2005

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2005

18

Functional insights from the structural modelling of a small Fe-hydrogenase

Silvio C.E. Tosatto, Giorgio M. Giacometti, Giorgio Valle, Paola Costantini

Journal:

Biochemical and Biophysical Research Communications

Année:

2006

Langue:

english

Fichier:

PDF, 420 KB

english, 2006

19

Linear motifs in the C-terminus of D. melanogaster cryptochrome

Matthew J. Hemsley, Gabriella M. Mazzotta, Moyra Mason, Stephane Dissel, Stefano Toppo, Mario A. Pagano, Federica Sandrelli, Flavio Meggio, Ezio Rosato, Rodolfo Costa, Silvio C.E. Tosatto

Journal:

Biochemical and Biophysical Research Communications

Année:

2007

Langue:

english

Fichier:

PDF, 683 KB

english, 2007

20

The N-terminal half of the receptor domain of botulinum neurotoxin A binds to microdomains of the plasma membrane

Lucia Muraro, Silvio Tosatto, Lisa Motterlini, Ornella Rossetto, Cesare Montecucco

Journal:

Biochemical and Biophysical Research Communications

Année:

2009

Langue:

english

Fichier:

PDF, 381 KB

english, 2009

21

Immune roles of a rhamnose-binding lectin in the colonial ascidian Botryllus schlosseri

Nicola Franchi, Filippo Schiavon, Matteo Carletto, Fabio Gasparini, Giulio Bertoloni, Silvio C.E. Tosatto, Loriano Ballarin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2011

22

The Thioredoxin Specificity of Drosophila GPx: A Paradigm for a Peroxiredoxin-like Mechanism of many Glutathione Peroxidases

Matilde Maiorino, Fulvio Ursini, Valentina Bosello, Stefano Toppo, Silvio C.E. Tosatto, Pierluigi Mauri, Katja Becker, Antonella Roveri, Cristiana Bulato, Louise Benazzi, Antonella De Palma, Leopold F

Journal:

Journal of Molecular Biology

Année:

2007

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2007

23

A CRY FROM THE KRILL

Mazzotta, Gabriella M., De Pittà, Cristiano, Benna, Clara, Tosatto, Silvio C. E., Lanfranchi, Gerolamo, Bertolucci, Cristiano, Costa, Rodolfo

Journal:

Chronobiology International

Année:

2010

Langue:

english

Fichier:

PDF, 585 KB

english, 2010

24

Looking for putative phenoloxidases of compound ascidians: Haemocyanin-like proteins in Polyandrocarpa misakiensis and Botryllus schlosseri

Loriano Ballarin, Nicola Franchi, Filippo Schiavon, Silvio C.E. Tosatto, Ivan Mičetić, Kazuo Kawamura

Journal:

Developmental & Comparative Immunology

Année:

2012

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2012

25

Evolutionary and Structural Insights Into the Multifaceted Glutathione Peroxidase (Gpx) Superfamily

Toppo, Stefano, Vanin, Stefano, Bosello, Valentina, Tosatto, Silvio C.E.

Journal:

Antioxidants & Redox Signaling

Année:

2008

Langue:

english

Fichier:

PDF, 886 KB

english, 2008

26

In silico investigation of PHD-3 specific HIF1-α proline 567 hydroxylation: A new player in the VHL/HIF-1α interaction pathway?

Minervini, Giovanni, Masiero, Alessandro, Moro, Stefano, Tosatto, Silvio C.E.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2013

27

Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database

Tomás Di Domenico, Ian Walsh, Silvio CE Tosatto

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2013

28

RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance

Walsh, Ian, Domenico, Tomás, Tosatto, Silvio C. E.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 451 KB

english, 2014

29

The role of the N-terminal tail for the oligomerization, folding and stability of human frataxin

Faraj, Santiago E., Venturutti, Leandro, Roman, Ernesto A., Marino-Buslje, Cristina B., Mignone, Astor, Tosatto, Silvio C.E., Delfino, José M., Santos, Javier

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2013

30

NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation

Giollo, Manuel, Martin, Alberto JM, Walsh, Ian, Ferrari, Carlo, Tosatto, Silvio CE

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 640 KB

english, 2014

31

The Victor/FRST Function for Model Quality Estimation

Tosatto, Silvio C.E.

Journal:

Journal of Computational Biology

Année:

2005

Langue:

english

Fichier:

PDF, 91 KB

english, 2005

32

Structural protein reorganization and fold emergence investigated through amino acid sequence permutations

Minervini, Giovanni, Masiero, Alessandro, Potenza, Emilio, Tosatto, Silvio C. E.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 991 KB

english, 2015

33

Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping

Silvio C.E. Tosatto, Bentham Science Publisher, Albiero, Alessandro, Mantovan, Alessandra, Ferrari, Carlo, Bindewald, Eckart, Toppo, Stefano

Journal:

Current Drug Discovery Technologies

Année:

2006

Langue:

english

Fichier:

PDF, 301 KB

english, 2006

34

Fine-Grained Statistical Torsion Angle Potentials are Effective in Discriminating Native Protein Structures

Albiero, Alessandro, Tosatto, Silvio

Journal:

Current Drug Discovery Technologies

Année:

2006

Langue:

english

Fichier:

PDF, 118 KB

english, 2006

35

Studying Interactions by Molecular Dynamics Simulations at High Concentration

Fogolari, Federico, Corazza, Alessandra, Toppo, Stefano, Tosatto, Silvio C. E., Viglino, Paolo, Ursini, Fulvio, Esposito, Gennaro

Journal:

Journal of Biomedicine and Biotechnology

Année:

2012

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2012

36

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity

Piovesan, Damiano, Giollo, Manuel, Leonardi, Emanuela, Ferrari, Carlo, Tosatto, Silvio C.E.

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2015

37

Protein function prediction using guilty by association from interaction networks

Piovesan, Damiano, Giollo, Manuel, Ferrari, Carlo, Tosatto, Silvio C. E.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2015

38

Evaluation of the steric impact of flavin adenine dinucleotide in Drosophila melanogaster cryptochrome function

Masiero, Alessandro, Aufiero, Simona, Minervini, Giovanni, Moro, Stefano, Costa, Rodolfo, Tosatto, Silvio C.E.

Journal:

Biochemical and Biophysical Research Communications

Année:

2014

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2014

39

BOOGIE: Predicting Blood Groups from High Throughput Sequencing Data

Giollo, Manuel, Minervini, Giovanni, Scalzotto, Marta, Leonardi, Emanuela, Ferrari, Carlo, Tosatto, Silvio C. E., Seo, Jeong-Sun

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2015

40

Insights into the proline hydroxylase (PHD) family, molecular evolution and its impact on human health

Minervini, Giovanni, Quaglia, Federica, Tosatto, Silvio C.E.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.95 MB

english, 2015

41

Correct machine learning on protein sequences: a peer-reviewing perspective

Walsh, Ian, Pollastri, Gianluca, Tosatto, Silvio C. E.

Journal:

Briefings in Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2015

42

Identification of repetitive units in protein structures with ReUPred

Hirsh, Layla, Piovesan, Damiano, Paladin, Lisanna, Tosatto, Silvio C. E.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2016

43

Exploration of alternative splicing events in ten different grapevine cultivars

Potenza, Emilio, Racchi, Milvia Luisa, Sterck, Lieven, Coller, Emanuela, Asquini, Elisa, Tosatto, Silvio C. E., Velasco, Riccardo, Van de Peer, Yves, Cestaro, Alessandro

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 658 KB

english, 2015

44

The RING 2.0 web server for high quality residue interaction networks

Piovesan, Damiano, Minervini, Giovanni, Tosatto, Silvio C.E.

Journal:

Nucleic Acids Research

Année:

2016

Langue:

english

Fichier:

PDF, 2.66 MB

english, 2016

45

Disorder transitions and conformational diversity cooperatively modulate biological function in proteins

Zea, Diego Javier, Monzon, Alexander Miguel, Gonzalez, Claudia, Fornasari, María Silvina, Tosatto, Silvio C. E., Parisi, Gustavo

Journal:

Protein Science

Année:

2016

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2016

46

Structural in silico dissection of the collagen V interactome to identify genotype-phenotype correlations in classic Ehlers-Danlos Syndrome (EDS)

Paladin, Lisanna, Tosatto, Silvio C.E., Minervini, Giovanni

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2015

47

Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe

Necci, Marco, Piovesan, Damiano, Tosatto, Silvio C.E.

Journal:

Protein Science

Année:

2016

Langue:

english

Fichier:

PDF, 1.92 MB

english, 2016

48

The Ca2+ regulatory site of the permeability transition pore is within the catalytic core of F-ATP synthase

Giorgio, Valentina, Burchell, Victoria, Schiavone, Marco, Bassot, Claudio, Minervini, Giovanni, Tosatto, Silvio, Argenton, Francesco, Petronilli, Valeria, Forte, Mike, Lippe, Giovanna, Bernardi, Paolo

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Année:

2016

Langue:

english

Fichier:

PDF, 63 KB

english, 2016

49

Mapping pathogenic mutations suggests an innovative structural model for the pendrin (SLC26A4) transmembrane domain

Bassot, Claudio, Minervini, Giovanni, Leonardi, Emanuela, Tosatto, Silvio C.E.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2016

50

VHLdb: A database of von Hippel-Lindau protein interactors and mutations

Tabaro, Francesco, Minervini, Giovanni, Sundus, Faiza, Quaglia, Federica, Leonardi, Emanuela, Piovesan, Damiano, Tosatto, Silvio C. E.

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 941 KB

english, 2016